Package: rSEA 2.1.2

Mitra Ebrahimpoor

rSEA: Simultaneous Enrichment Analysis

SEA performs simultaneous feature-set testing for (gen)omics data. It tests the unified null hypothesis and controls the family-wise error rate for all possible pathways. The unified null hypothesis is defined as: "The proportion of true features in the set is less than or equal to a threshold." Family-wise error rate control is provided through use of closed testing with Simes test. There are some practical functions to play around with the pathways of interest.

Authors:Mitra Ebrahimpoor

rSEA_2.1.2.tar.gz
rSEA_2.1.2.zip(r-4.5)rSEA_2.1.2.zip(r-4.4)rSEA_2.1.2.zip(r-4.3)
rSEA_2.1.2.tgz(r-4.5-any)rSEA_2.1.2.tgz(r-4.4-any)rSEA_2.1.2.tgz(r-4.3-any)
rSEA_2.1.2.tar.gz(r-4.5-noble)rSEA_2.1.2.tar.gz(r-4.4-noble)
rSEA_2.1.2.tgz(r-4.4-emscripten)rSEA_2.1.2.tgz(r-4.3-emscripten)
rSEA.pdf |rSEA.html✨
rSEA/json (API)

# Install 'rSEA' in R:
install.packages('rSEA', repos = c('https://mitra-ep.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/mitra-ep/rsea/issues

On CRAN:

Conda:

3.70 score 10 scripts 626 downloads 5 exports 30 dependencies

Last updated 9 months agofrom:e1da2d83d9. Checks:1 OK, 7 NOTE. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKFeb 28 2025
R-4.5-winNOTEFeb 28 2025
R-4.5-macNOTEFeb 28 2025
R-4.5-linuxNOTEFeb 28 2025
R-4.4-winNOTEFeb 28 2025
R-4.4-macNOTEFeb 28 2025
R-4.3-winNOTEFeb 28 2025
R-4.3-macNOTEFeb 28 2025

Exports:plotSEASEAsetTDPsetTesttopSEA

Dependencies:clicolorspacefansifarverggplot2gluegtablehommelisobandlabelinglatticelifecyclemagrittrMASSMatrixmgcvmunsellnlmepillarpkgconfigR6RColorBrewerRcpprlangscalestibbleutf8vctrsviridisLitewithr

rSEA R package

Mitra Ebrahimpoor

Rendered fromrSEA_vignette.Rmdusingknitr::rmarkdownon Feb 28 2025.

Last update: 2021-10-17
Started: 2019-10-07