Package: rSEA 2.1.2

Mitra Ebrahimpoor

rSEA: Simultaneous Enrichment Analysis

SEA performs simultaneous feature-set testing for (gen)omics data. It tests the unified null hypothesis and controls the family-wise error rate for all possible pathways. The unified null hypothesis is defined as: "The proportion of true features in the set is less than or equal to a threshold." Family-wise error rate control is provided through use of closed testing with Simes test. There are some practical functions to play around with the pathways of interest.

Authors:Mitra Ebrahimpoor

rSEA_2.1.2.tar.gz
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rSEA.pdf |rSEA.html✨
rSEA/json (API)

Peer review:

Bug tracker:https://github.com/mitra-ep/rsea/issues

On CRAN:

5 exports 0.89 score 30 dependencies 11 scripts 768 downloads

Last updated 3 months agofrom:e1da2d83d9. Checks:OK: 1 NOTE: 6. Indexed: yes.

Exports:plotSEASEAsetTDPsetTesttopSEA

Dependencies:clicolorspacefansifarverggplot2gluegtablehommelisobandlabelinglatticelifecyclemagrittrMASSMatrixmgcvmunsellnlmepillarpkgconfigR6RColorBrewerRcpprlangscalestibbleutf8vctrsviridisLitewithr