Package: rSEA 2.1.2
Mitra Ebrahimpoor
rSEA: Simultaneous Enrichment Analysis
SEA performs simultaneous feature-set testing for (gen)omics data. It tests the unified null hypothesis and controls the family-wise error rate for all possible pathways. The unified null hypothesis is defined as: "The proportion of true features in the set is less than or equal to a threshold." Family-wise error rate control is provided through use of closed testing with Simes test. There are some practical functions to play around with the pathways of interest.
Authors:
rSEA_2.1.2.tar.gz
rSEA_2.1.2.zip(r-4.5)rSEA_2.1.2.zip(r-4.4)rSEA_2.1.2.zip(r-4.3)
rSEA_2.1.2.tgz(r-4.4-any)rSEA_2.1.2.tgz(r-4.3-any)
rSEA_2.1.2.tar.gz(r-4.5-noble)rSEA_2.1.2.tar.gz(r-4.4-noble)
rSEA_2.1.2.tgz(r-4.4-emscripten)rSEA_2.1.2.tgz(r-4.3-emscripten)
rSEA.pdf |rSEA.html✨
rSEA/json (API)
# Install 'rSEA' in R: |
install.packages('rSEA', repos = c('https://mitra-ep.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/mitra-ep/rsea/issues
Last updated 6 months agofrom:e1da2d83d9. Checks:OK: 1 NOTE: 6. Indexed: yes.
Target | Result | Date |
---|---|---|
Doc / Vignettes | OK | Oct 31 2024 |
R-4.5-win | NOTE | Oct 31 2024 |
R-4.5-linux | NOTE | Oct 31 2024 |
R-4.4-win | NOTE | Oct 31 2024 |
R-4.4-mac | NOTE | Oct 31 2024 |
R-4.3-win | NOTE | Oct 31 2024 |
R-4.3-mac | NOTE | Oct 31 2024 |
Exports:plotSEASEAsetTDPsetTesttopSEA
Dependencies:clicolorspacefansifarverggplot2gluegtablehommelisobandlabelinglatticelifecyclemagrittrMASSMatrixmgcvmunsellnlmepillarpkgconfigR6RColorBrewerRcpprlangscalestibbleutf8vctrsviridisLitewithr
Readme and manuals
Help Manual
Help page | Topics |
---|---|
Simultaneous Enrichment Analysis (SEA) of all possible feature-sets using the unified null hypothesis | rSEA-package |
topSEA | plotSEA |
SEA | SEA |
setTDP | setTDP |
setTest | setTest |
topSEA | topSEA |