{
  "_id": "6a102137acfb0bcc41c8bfb5",
  "Package": "rSEA",
  "Type": "Package",
  "Title": "Simultaneous Enrichment Analysis",
  "Version": "2.1.2",
  "Author": "Mitra Ebrahimpoor",
  "Maintainer": "Mitra Ebrahimpoor<m.ebrahimpoor@lumc.nl>",
  "Description": "SEA performs simultaneous feature-set testing for\n(gen)omics data. It tests the unified null hypothesis and\ncontrols the family-wise error rate for all possible pathways.\nThe unified null hypothesis is defined as: \"The proportion of\ntrue features in the set is less than or equal to a threshold.\"\nFamily-wise error rate control is provided through use of\nclosed testing with Simes test. There are some practical\nfunctions to play around with the pathways of interest.",
  "License": "GPL (>= 2)",
  "Date": "2019-10-02",
  "Encoding": "UTF-8",
  "VignetteBuilder": "knitr",
  "RoxygenNote": "7.3.1",
  "Repository": "https://mitra-ep.r-universe.dev",
  "Date/Publication": "2024-06-11 22:31:52 UTC",
  "RemoteUrl": "https://github.com/mitra-ep/rsea",
  "RemoteRef": "HEAD",
  "RemoteSha": "e1da2d83d96adcd3917098afdb0239962c759ddb",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-05-22 09:23:25 UTC",
    "User": "root"
  },
  "MD5sum": "3412d3717a1f6db6eee189e7d444e8e9",
  "_user": "mitra-ep",
  "_type": "src",
  "_file": "rSEA_2.1.2.tar.gz",
  "_fileid": "5e262f047d64d9563d91be2f3fe2b2db077faa24555b346d34d7d16245747b79",
  "_filesize": 142119,
  "_sha256": "5e262f047d64d9563d91be2f3fe2b2db077faa24555b346d34d7d16245747b79",
  "_created": "2026-05-22T09:23:25.000Z",
  "_published": "2026-05-22T09:26:15.812Z",
  "_distro": "noble",
  "_jobs": [
    {
      "job": 77352360192,
      "time": 135,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "NOTE",
      "artifact": "7157225621"
    },
    {
      "job": 77352360133,
      "time": 121,
      "config": "linux-release-x86_64",
      "r": "4.6.0",
      "check": "NOTE",
      "artifact": "7157221596"
    },
    {
      "job": 77352360171,
      "time": 89,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "NOTE",
      "artifact": "7157211827"
    },
    {
      "job": 77352360217,
      "time": 93,
      "config": "macos-release-arm64",
      "r": "4.6.0",
      "check": "NOTE",
      "artifact": "7157212469"
    },
    {
      "job": 77351908766,
      "time": 174,
      "config": "source",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7157181748"
    },
    {
      "job": 77352360562,
      "time": 102,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7157215829"
    },
    {
      "job": 77352360150,
      "time": 81,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "NOTE",
      "artifact": "7157209110"
    },
    {
      "job": 77352360201,
      "time": 76,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "NOTE",
      "artifact": "7157207102"
    },
    {
      "job": 77352360174,
      "time": 101,
      "config": "windows-release",
      "r": "4.6.0",
      "check": "NOTE",
      "artifact": "7157215133"
    }
  ],
  "_buildurl": "https://github.com/r-universe/mitra-ep/actions/runs/26279484911",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_upstream": "https://github.com/mitra-ep/rsea",
  "_commit": {
    "id": "e1da2d83d96adcd3917098afdb0239962c759ddb",
    "author": "mitra-ep <mitra.ebrahimpoor@gmail.com>",
    "committer": "mitra-ep <mitra.ebrahimpoor@gmail.com>",
    "message": "fixes\n",
    "time": 1718145112
  },
  "_maintainer": {
    "name": "Mitra Ebrahimpoor",
    "email": "m.ebrahimpoor@lumc.nl"
  },
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 2.10",
      "role": "Depends"
    },
    {
      "package": "hommel",
      "version": ">= 1.4",
      "role": "Depends"
    },
    {
      "package": "ggplot2",
      "role": "Depends"
    },
    {
      "package": "knitr",
      "role": "Suggests"
    },
    {
      "package": "rmarkdown",
      "role": "Suggests"
    }
  ],
  "_owner": "mitra-ep",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [],
  "_tags": [],
  "_stars": 0,
  "_contributors": [
    {
      "user": "mitra-ep",
      "count": 6,
      "uuid": 28264201
    },
    {
      "user": "yihui",
      "count": 1,
      "uuid": 163582
    }
  ],
  "_userbio": {
    "uuid": 28264201,
    "type": "user",
    "name": "Mitra Ebrahimpoor",
    "description": "I am a statistician involved in medical research!"
  },
  "_downloads": {
    "count": 631,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/rSEA"
  },
  "_devurl": "https://github.com/mitra-ep/rsea",
  "_searchresults": 10,
  "_rbuild": "4.6.0",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/readme.html",
    "extra/readme.md",
    "extra/rSEA.html",
    "manual.pdf"
  ],
  "_homeurl": "https://github.com/mitra-ep/rsea",
  "_realowner": "mitra-ep",
  "_cranurl": true,
  "_releases": [
    {
      "version": "1.0",
      "date": "2018-11-30"
    },
    {
      "version": "1.0.1",
      "date": "2019-02-21"
    },
    {
      "version": "2.0.0",
      "date": "2019-10-03"
    },
    {
      "version": "2.1.0",
      "date": "2019-10-06"
    },
    {
      "version": "2.1.1",
      "date": "2020-03-23"
    },
    {
      "version": "2.1.2",
      "date": "2024-06-14"
    }
  ],
  "_exports": [
    "plotSEA",
    "SEA",
    "setTDP",
    "setTest",
    "topSEA"
  ],
  "_help": [
    {
      "page": "rSEA-package",
      "title": "Simultaneous Enrichment Analysis (SEA) of all possible feature-sets using the unified null hypothesis",
      "topics": [
        "rSEA-package"
      ]
    },
    {
      "page": "plotSEA",
      "title": "topSEA",
      "topics": [
        "plotSEA"
      ]
    },
    {
      "page": "SEA",
      "title": "SEA",
      "topics": [
        "SEA"
      ]
    },
    {
      "page": "setTDP",
      "title": "setTDP",
      "topics": [
        "setTDP"
      ]
    },
    {
      "page": "setTest",
      "title": "setTest",
      "topics": [
        "setTest"
      ]
    },
    {
      "page": "topSEA",
      "title": "topSEA",
      "topics": [
        "topSEA"
      ]
    }
  ],
  "_readme": "https://github.com/mitra-ep/rsea/raw/HEAD/README.md",
  "_rundeps": [
    "cli",
    "cpp11",
    "farver",
    "ggplot2",
    "glue",
    "gtable",
    "hommel",
    "isoband",
    "labeling",
    "lifecycle",
    "R6",
    "RColorBrewer",
    "Rcpp",
    "rlang",
    "S7",
    "scales",
    "vctrs",
    "viridisLite",
    "withr"
  ],
  "_vignettes": [
    {
      "source": "rSEA_vignette.Rmd",
      "filename": "rSEA_vignette.html",
      "title": "rSEA R package",
      "author": "Mitra Ebrahimpoor",
      "engine": "knitr::rmarkdown",
      "headings": [
        "Simultaneous Enrichment Analysis with rSEA",
        "Overview of the Method",
        "Defining the unified null hypothesis",
        "Usage",
        "Input and format",
        "Example dataset",
        "setTDP() function",
        "setTest() function",
        "SEA() function",
        "topSEA() function",
        "Creating the Pathlists",
        "GO pathways",
        "KEGG pathways",
        "Wikipathways",
        "Citing rSEA"
      ],
      "created": "2019-10-07 14:12:08",
      "modified": "2021-10-17 19:59:20",
      "commits": 2
    }
  ],
  "_score": 3.6989700043360187,
  "_indexed": true,
  "_nocasepkg": "rsea",
  "_universes": [
    "mitra-ep"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "2.1.2",
      "date": "2026-05-22T09:25:26.000Z",
      "distro": "noble",
      "commit": "e1da2d83d96adcd3917098afdb0239962c759ddb",
      "fileid": "d58fdf90aac1e03e9b9620119658fd5ba4e848bd6429cb15d84f992374859e2c",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/mitra-ep/actions/runs/26279484911"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "2.1.2",
      "date": "2026-05-22T09:25:20.000Z",
      "distro": "noble",
      "commit": "e1da2d83d96adcd3917098afdb0239962c759ddb",
      "fileid": "c495ab1dfc26d4fbe028f4939392dcdf273976efa43123cdbf14cb1d3f3de913",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/mitra-ep/actions/runs/26279484911"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "2.1.2",
      "date": "2026-05-22T09:24:57.000Z",
      "commit": "e1da2d83d96adcd3917098afdb0239962c759ddb",
      "fileid": "d8a092fe62768148f61dd612057ec9a21737fda4e75bea5cfa3b18163b28ad30",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/mitra-ep/actions/runs/26279484911"
    },
    {
      "r": "4.6.0",
      "os": "mac",
      "version": "2.1.2",
      "date": "2026-05-22T09:24:58.000Z",
      "commit": "e1da2d83d96adcd3917098afdb0239962c759ddb",
      "fileid": "5051470d03e9b441c43d0d33bca8d61d9fb2866e4110f44e3fe03417eeef11c4",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/mitra-ep/actions/runs/26279484911"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "2.1.2",
      "date": "2026-05-22T09:25:25.000Z",
      "commit": "e1da2d83d96adcd3917098afdb0239962c759ddb",
      "fileid": "c357e8ac6ee7b5291530e44cf862901cdd826d4e61acb21bb8bcd245a2cf3a68",
      "status": "success",
      "buildurl": "https://github.com/r-universe/mitra-ep/actions/runs/26279484911"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "2.1.2",
      "date": "2026-05-22T09:24:37.000Z",
      "commit": "e1da2d83d96adcd3917098afdb0239962c759ddb",
      "fileid": "cae58f72ab71834c90a96278e9b11ea0586738336300d1f857b54199dc574f9e",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/mitra-ep/actions/runs/26279484911"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "2.1.2",
      "date": "2026-05-22T09:24:30.000Z",
      "commit": "e1da2d83d96adcd3917098afdb0239962c759ddb",
      "fileid": "306f6bcaeb762eac906383a06519d11ba80adc6d119dda7b4a63208dfb8dc590",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/mitra-ep/actions/runs/26279484911"
    },
    {
      "r": "4.6.0",
      "os": "win",
      "version": "2.1.2",
      "date": "2026-05-22T09:24:52.000Z",
      "commit": "e1da2d83d96adcd3917098afdb0239962c759ddb",
      "fileid": "489c676e979d829b06d52bdb2e6ab07b0f6f67721981a3bf490ee2c073f7f050",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/mitra-ep/actions/runs/26279484911"
    }
  ]
}