Package: rOCEAN 1.0
rOCEAN: Two-Way Feature Set Testing for Multi-Omics
For any two way feature-set from a pair of pre-processed omics data, 3 different true discovery proportions (TDP), namely pairwise-TDP, column-TDP and row-TDP are calculated. Due to embedded closed testing procedure, the choice of feature-sets can be changed infinite times and even after seeing the data without any change in type I error rate. For more details refer to Ebrahimpoor et al., (2024) <doi:10.48550/arXiv.2410.19523>.
Authors:
rOCEAN_1.0.tar.gz
rOCEAN_1.0.zip(r-4.7)rOCEAN_1.0.zip(r-4.6)rOCEAN_1.0.zip(r-4.5)
rOCEAN_1.0.tgz(r-4.6-any)rOCEAN_1.0.tgz(r-4.5-any)
rOCEAN_1.0.tar.gz(r-4.7-any)rOCEAN_1.0.tar.gz(r-4.6-any)
rOCEAN_1.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
rOCEAN/json (API)
| # Install 'rOCEAN' in R: |
| install.packages('rOCEAN', repos = c('https://mitra-ep.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/mitra-ep/rocean/issues
Last updated from:465f227bc1. Checks:9 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel-x86_64 | OK | 108 | ||
| source / vignettes | OK | 142 | ||
| linux-release-x86_64 | OK | 142 | ||
| macos-release-arm64 | OK | 178 | ||
| macos-oldrel-arm64 | OK | 211 | ||
| windows-devel | OK | 86 | ||
| windows-release | OK | 78 | ||
| windows-oldrel | OK | 107 | ||
| wasm-release | OK | 93 |
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Calculate pairwise p-value | corPs |
| Calculate cumulative p-categories | getCat |
| OCEAN algorithm | ocean |
| pairwise true discoveries proportion | pairTDP |
| Branch and bound algorithm implementation | runbab |
| Closed testing with Simes | simesCT |
| Single step algorithm | singleStep |
