Package: rOCEAN 1.0
rOCEAN: Two-Way Feature Set Testing for Multi-Omics
For any two way feature-set from a pair of pre-processed omics data, pairwise-TDP, Column-TDP and row-TDP are calculated. Due to embeded closed testing procedure, the choice of feature-sets can be changed infinite times and even after seeing the data withuot any change in type I error rate. For more details refer to the refrence article.
Authors:
rOCEAN_1.0.tar.gz
rOCEAN_1.0.zip(r-4.5)rOCEAN_1.0.zip(r-4.4)rOCEAN_1.0.zip(r-4.3)
rOCEAN_1.0.tgz(r-4.4-any)rOCEAN_1.0.tgz(r-4.3-any)
rOCEAN_1.0.tar.gz(r-4.5-noble)rOCEAN_1.0.tar.gz(r-4.4-noble)
rOCEAN_1.0.tgz(r-4.4-emscripten)rOCEAN_1.0.tgz(r-4.3-emscripten)
rOCEAN.pdf |rOCEAN.html✨
rOCEAN/json (API)
# Install 'rOCEAN' in R: |
install.packages('rOCEAN', repos = c('https://mitra-ep.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/mitra-ep/rocean/issues
Last updated 21 days agofrom:4c44201690. Checks:OK: 3 NOTE: 4. Indexed: yes.
Target | Result | Date |
---|---|---|
Doc / Vignettes | OK | Nov 13 2024 |
R-4.5-win | OK | Nov 13 2024 |
R-4.5-linux | OK | Nov 13 2024 |
R-4.4-win | NOTE | Nov 13 2024 |
R-4.4-mac | NOTE | Nov 13 2024 |
R-4.3-win | NOTE | Nov 13 2024 |
R-4.3-mac | NOTE | Nov 13 2024 |
Readme and manuals
Help Manual
Help page | Topics |
---|---|
Calculate pairwise p-value | corPs |
Calculate p-categories | getCat |
OCEAN algorithm | ocean |
pairwise true discoveries proportion | pairTDP |
Branch and bound algorithm implementation | runbab |
Closed testing with Simes | simesCT |
Single step algorithm | singleStep |